Priyanka Chhabra Assistant Professor, School of Basic and Applied Sciences, Galgotias University, Greater Noida 201310, Uttar Pradesh, India., India
Ibrahim El-ladan Shehu1 null null, null
Address for correspondence: Priyanka Chhabra, Assistant Professor, School of Basic and Applied Sciences, Galgotias University, Greater Noida 201310, Uttar Pradesh, India., India E-mail: pchhabra188@gmail.comIbrahim El-ladan Shehu1, Priyanka Chhabra
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Indian Journal of Forensic Medicine and Pathology
14(2 (Special Issue)):p 379-385, April-June 2021. | DOI: 10.21088/ijfmp.0974.3383.14221.53
How Cite This Article:
Shehu IE. African Y-STR haplotyping and Y chromosome profiling: a review. Indian J Forensic Med Pathol. 2021;14(3 Special):379-85.
Timeline
Received : April 02, 2021
Accepted : April 20, 2021
Published : June 30, 2021
Abstract
Forensic genetics is an indispensable tool in forensic analysis that uses genetic evidence in crime investigation and/or identification of missing individuals or victims of mass disaster. It is highly reliable and can be used to substantiate evidence to prove the guilt or innocence of a suspect in question. There is paucity of data on African
forensic DNA profiling. This is partly due to lack of funding and expertise. Moreover, there are very limited forensic genetic commercial kits that incorporate markers that are specific for African populations, markers that will provide highly specific information on the African Y-STR markers. Therefore, the purpose of this study is to consolidate the published Y-STR data of African population for forensic and population genetic reference. The review presents the Y-haplotype and genetic diversity of African male population. The review dissects the data into different regions of the African continent, viz., the Northern, Southern, Eastern, Western and Central African regions.
2. Singh M, Sarkar A, Nandineni MR. A comprehensive portrait of Y-STR diversity of Indian populations and comparison with 129 worldwide populations. Sci Rep. 2018;8(1):4421.
3. Watahiki H, Fujii K, Fukagawa T, Mita Y, Maniwa S, Kitayama T, et al. Polymorphisms and microvariant sequences in the Japanese population for 25 Y-STR markers and their relationships to Y-chromosome haplogroups. Forensic Sci Int Genet [Internet]. 2019;41:e1–7. Available from: https://doi.org/10.1016/j.fsigen.2019.03.004
4. Kasu M, Fredericks J, Fraser M, Labuschagne C, Lesaoana M, D’Amato ME. Novel Y-chromosome short tandem repeat sequence variation for loci DYS710, DYS518, DYS385, DYS644, DYS612, DYS626, DYS504, DYS481, DYS447 and DYS449. Int J Legal Med. 2019;133(6):1681–9.
5. Oliveira AM, Gusmão L, Schneider PM, Gomes I. Detecting the paternal genetic diversity in West Africa using Y-STRs and Y-SNPs. Forensic Sci Int Genet Suppl Ser [Internet]. 2015;5:e213–5. Available from: http://dx.doi.org/10.1016/j.fsigss.2015.09.085
6. Balamurugan K, Duncan G. Y chromosome STR allelic and haplotype diversity in a Rwanda population from East Central Africa. Leg Med (Tokyo) [Internet]. 2012;14(2):105–9. Available from: http://dx.doi.org/10.1016/j.legalmed.2011.12.002
7. Arroyo-Pardo E, Gusmão L, López-Parra AM, Baeza C, Mesa MS, Amorim A. Genetic variability of 16 Y-chromosome STRs in a sample from Equatorial Guinea (Central Africa). Forensic Sci Int. 2005;149(1):109–13.
8. Berniell-Lee G, Bosch E, Bertranpetit J, Comas D. Y-chromosome diversity in Bantu and Pygmy populations from Central Africa. Int Congr Ser. 2006;1288:234–6.
9. Lecerf M, Filali M, Grésenguet G, Ndjoyi-Mbiguino A, Le Goff J, de Mazancourt P, et al. Allele frequencies and haplotypes of eight Y-short tandem repeats in Bantu population living in Central Africa. Forensic Sci Int. 2007;171(2–3):212–5.
10. Barrot C, Sánchez C, Xifró A, Ortega M, Mas J, Huguet E, et al. Data for Y-chromosome haplotypes in Fang and Bubi populations from Bioko (Equatorial Guinea). Forensic Sci Int. 2007;168(1):10–2.
11. Alves C, Gusmão L, Barbosa J, Amorim A. Evaluating the informative power of Y-STRs: a comparative study using European and new African haplotype data. Forensic Sci Int. 2003;134(2–3):126–33.
12. Gusmão L, Sánchez-Diz P, Gomes I, Alves C, Carracedo Á, João Prata M, et al. Genetic analysis of autosomal and Y-specific STRs in the Karimojong population from Uganda. Int Congr Ser. 2006;1288:213–5.
13. Gomes V, Alves C, Amorim A, Carracedo Á, Gusmão L. Haplotype data defined by 17 Y-chromosome STRs. Forensic Sci Int Genet. 2010;4(4):e115-6.
14. Bosch E, Calafell F, Pérez-Lezaun A, Comas D, Izaabel H, Akhayat O, et al. Y chromosome STR haplotypes in four populations from northwest Africa. Int J Legal Med. 2000;114(1–2):36–40.
15. El Khil HK, Marrakchi RT, Loueslati BY, Ennafaa H, Amorim A, Gusmão L, et al. Y chromosome microsatellite variation in three populations of Jerba Island (Tunisia). Ann Hum Genet. 2001;65(3):263–70.
16. Khodjet El Khil H, Marrakchi RT, Loueslati BY, Ennafaa H, Amorim A, Gusmão L, et al. Distribution of Y chromosome lineages in Jerba island population. Forensic Sci Int. 2005;148(2–3):211–8.
17. Ayadi I, Ammar-Keskes L, Rebai A. Haplotypes for 13 Y-chromosomal STR loci in South Tunisian population (Sfax region). Forensic Sci Int. 2006;164(2–3):249–53.
18. Onofri V, Alessandrini F, Turchi C, Pesaresi M, Tagliabracci A. Y-chromosome markers distribution in Northern Africa: high-resolution SNP and STR analysis in Tunisia and Morocco populations. Forensic Sci Int Genet Suppl Ser. 2008;1(1):235–6.
19. Aboukhalid R, Bouabdellah M, Abbassi O, Bentayebi K, Elmzibri M, Squalli D, et al. Haplotype frequencies for 17 Y-STR loci (AmpFlSTR® Yfiler™) in a Moroccan population sample. Forensic Sci Int Genet. 2010;4(3):e73-4.
20. Gaibar M, Esteban E, Harich N, Abdellah EL, Pascual J, Arroyo-Pardo E, et al. Genetic differences among North African Berber and Arab-speaking populations revealed by Y-STR diversity. Ann Hum Biol. 2011;38(2):228–36.
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Cite this article
Shehu IE. African Y-STR haplotyping and Y chromosome profiling: a review. Indian J Forensic Med Pathol. 2021;14(3 Special):379-85.
This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.
This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.