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From Sequencing to Prediction: Leveraging Next Generation Sequencing & Machine Learning in Microbiome-Based Postmortem Interval Estimation

Ninad Vilas Nagrale, Urna Chakraborty, Oinam Gambhir Singh, Arijit Dey, Venkatesh J

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Attribution-Non-commercial 4.0 International (CC BY-NC 4.0)

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Journal of Hospital Administration 9(2):p 79-85, July-December 2025. | DOI: 10.21088/jha.2582-3566.9225.4

How Cite This Article:

Chakraborty U, Nagrale NV, Singh OG, et al. From sequencing to prediction: leveraging next generation sequencing & machine learning in microbiome-based postmortem interval estimation. RFP J Hosp Adm. 2025;9(2):79-85.

Timeline

Received : September 19, 2025         Accepted : December 01, 2025          Published : December 24, 2025

Abstract

Optimal determination of the postmortem interval (PMI) is one of the cornerstones of forensic analysis but oftentimes the dependence and variability of the conventional methods like entomology, histology and biochemical techniques most commonly experience sudden limitations since they are sensitive to the environment. New also cites the human microbiome as an active and quantifiable state of an after death postmortem clock, and post mortal microbial succession is an excellent clock. The integration of Next-Generation Sequencing (NGS) technologies and Machine Learning (ML) algorithms, though, is revolutionizing the field and is now able to profile microorganisms at high resolution and model and predict PMI with high accuracy. NGS technologies such as 16S rRNA sequencing, shotgun metagenomics and whole-genome sequencing can potentially lead organizations to find various types of microbial communities which were not used before with higher accuracy. None of them are capable, however, of bulking up these enormous data sets with superior computing methods. Machine learning algorithms like rule-based systems Rain Forest, the Support Vector Machines and deep learning systems have show the potential to recognize patterns of microbial succession regimes and translate them into useful prediction of PMI. The answer to this challenge lies in switched NGS and ML: with sequencing, the biological signal is provided, and predictive models are utilized in order to refine the temporal resolution and minimize the margin of error. Even with such progress, there are more challenging problems. In this instance variability between settings, the absence of standard procedures, small databases of forensic microbiomes, and its potential legal inadmissibility all pose hurdles to its application on a large scale. The development of portable sequencing machines, global forensic databases on microbes, and the explicable AI to suit the needs of the judiciary are the way forward. The article is a review of the current conditions of microbiome-based PMI estimation with a focus on highlighting how both NGS and ML can be valuable in developing an effective and standardized postmortem clock in forensic scientists.


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Data Sharing Statement

There are no additional data available.

Funding

This research received no funding.

Author Contributions

All authors contributed significantly to the work and approve its publication.

Ethics Declaration

This article does not involve any human or animal subjects, and therefore does not require ethics approval

Acknowledgements

Information Not Provided

Conflicts of Interest

No conflicts of interest in this work.


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Cite this article

Chakraborty U, Nagrale NV, Singh OG, et al. From sequencing to prediction: leveraging next generation sequencing & machine learning in microbiome-based postmortem interval estimation. RFP J Hosp Adm. 2025;9(2):79-85.


Licence:

Attribution-Non-commercial 4.0 International (CC BY-NC 4.0)

This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator. 


Received Accepted Published
September 19, 2025 December 01, 2025 December 24, 2025

DOI: 10.21088/jha.2582-3566.9225.4

Keywords

Postmortem Interval (PMI) EstimationForensic MicrobiomeThanatomicrobiomeNext-Generation Sequencing (NGS)Machine Learning Models

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Received September 19, 2025
Accepted December 01, 2025
Published December 24, 2025

licence


Attribution-Non-commercial 4.0 International (CC BY-NC 4.0)

This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator. 


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