Prachi Srivastava Associate Professor, Department of Bioinformatics, Amity Institute of Biotechnology, Amity University, Lucknow, Uttar Pradesh,, India
Amaan Arif Department of Bioinformatics, Amity Institute of Biotechnology, Amity University, Lucknow, Uttar Pradesh,, India
Address for correspondence: Prachi Srivastava, Associate Professor, Department of Bioinformatics, Amity Institute of Biotechnology, Amity University, Lucknow, Uttar Pradesh,, India E-mail: psrivastava@amity.edu
This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.
Amaan Arif, Prachi Srivastava. Unusual Cradle Hook Injury with Full Thickness Upper Eyelid Loss on A 3 year
Old Boy. International Journal of Neurology and Neurosurgery. 2025; 17(2): 70-79.
Timeline
Received : March 13, 2025
Accepted : May 01, 2025
Published : July 30, 2025
Abstract
Neuronal aging is a complex process characterized by cognitive decline and susceptibility to neurodegenerative diseases, including AD, MS, and PD. As individuals age, brain undergoes structural and functional alterations, leading to impaired synaptic plasticity, neuroinflammation, and oxidative stress. Additionally, aging weakens immune response, ultimately CNS more vulnerable to latent viral infections and reactivations. HSV-1 and EBV have been strongly implicated in neurodegenerative pathologies. HSV-1, a neurotropic virus, has been found in postmortem brains of AD patients, suggesting a role in amyloidbeta accumulation and chronic uroinflammation. Similarly, EBV has been linked to MS, with viral reactivation triggering inflammatory cascades that contribute to
demyelination and neurodegeneration. Other viruses, including CMV, HIV, and SARS-CoV-2, have also been associated with long-term neurological complications, worsening cognitive decline in aging individuals. By integrating deep learning and machine learning approaches, AI can predict disease progression, assess individual susceptibility to viral-induced neurodegeneration, and aid in early diagnosis. Brain
transcriptomics, which involves RNA sequencing and gene expression profiling, provides insights into molecular pathways disrupted by viral infections. These technologies enhance our ability to identify biomarkers for neurodegenerative diseases, paving the way for targeted interventions. This study highlights the
intersection of viral neuropathology, aging, and AI-based transcriptomics, emphasizing the need for computational tools to unravel the complexities of neurodegeneration. Understanding viral contributions to neuronal aging can lead to innovative therapeutic strategies, potentially mitigating the impact of chronic
viral infections on cognitive health. As AI continues to evolve, its integration with
2. Okenve-Ramos, P., Gosling, R., Chojnowska-Monga, M., Gupta, K., Shields, S., Alhadyian, H., Collie, C., Gregory, E., & Sanchez-Soriano, N. (2024). Neuronal ageing is promoted by the decay of the microtubule cytoskeleton. PLOS Biology, 22(3), e3002504. https://doi.org/10.1371/journal.pbio.3002504
3. Shafqat, A., Khan, S., Omer, M. H., Niaz, M., Albalkhi, I., AlKattan, K., Yaqinuddin, A., Tchkonia, T., Kirkland, J. L., & Hashmi, S. K. (2023). Cellular senescence in brain aging and cognitive decline. Frontiers in Aging Neuroscience. https://doi.org/10.3389/fnagi.2023.1281581
4. de Luzy, I. R., Lee, M. K., Mobley, W. C., & Studer, L. (2024). Lessons from inducible pluripotent stem cell models on neuronal senescence in aging and neurodegeneration. Nature Aging, 4(3), 309–318. https://doi.org/10.1038/s43587-024-00586-3
5. Gonzales, M. M., Garbarino, V. R., Pollet, E., Palavicini, J. P., Kellogg, D. L., Kraig, E., & Orr, M. E. (2022). Biological aging processes underlying cognitive decline and neurodegenerative disease. Journal of Clinical Investigation, 132. https://doi.org/10.1172/JCI158453
6. Ridderinkhof, K. R., &Krugers, H. J. (2022). Horizons in Human Aging Neuroscience: From Normal Neural Aging to Mental (Fr)Agility. Frontiers in Human Neuroscience, 16. https://doi.org/10.3389/fnhum.2022.815759
7. Chen, R., Ju, Z., Chen, J., Wang, L., Kang, R., & Tang, D. (2024). Immune aging and infectious diseases. Chinese Medical Journal. https://doi.org/10.1097/cm9.0000000000003410
8. Autio, A., Kettunen, J., Nevalainen, T. J., Kimura, B. Y., & Hurme, M. (2022). Herpesviruses and their genetic diversity in the blood virome of healthy individuals: effect of aging. Immunity & Ageing, 19(1). https://doi.org/10.1186/s12979-022-00268-x
9. Wrona, M. V., Ghosh, R., Coll, K., Chun, C., & Yousefzadeh, M. J. (2024). The 3 I’s of immunity and aging: immunosenescence, inflammaging, and immune resilience. Frontiers in Aging, 5. https://doi.org/10.3389/fragi.2024.1490302
10. Lee, K.-A., Flores, R., Jang, I. H., Saathoff, A., & Robbins, P. D. (2022). Immune Senescence, Immunosenescence and Aging. Frontiers in Aging, 3. https://doi.org/10.3389/fragi.2022.900028
11. Srivast, R., Agrawal, A., Vahed, H., &BenMohamed, L. (2023). Age-Related Impairment of Innate and Adaptive Immune Responses Exacerbate Respiratory Viral Infection in Older Mice. https://doi.org/10.21203/rs.3.rs-3133852/v1
12. Quiros-Roldan, E., Sottini, A., Natali, P. G., &Imberti, L. (2024). The Impact of Immune System Aging on Infectious Diseases. Microorganisms. https://doi.org/10.3390/microorganisms12040775
13. Hieber, C., Grabbe, S., & Bros, M. (2023). Counteracting Immunosenescence—Which Therapeutic Strategies Are Promising? Biomolecules, 13(7), 1085. https://doi.org/10.3390/biom13071085
15. Zhang, T., Li, Y., Pan, L., Sha, J., Bailey, M., Faure-Kumar, E., Williams, C. K., Wohlschlegel, J. A., Magaki, S., Niu, C., Lee, Y., Su, Y., Li, X., Vinters, H. V., & Geschwind, D. H. (2024). Brain-wide alterations revealed by spatial transcriptomics and proteomics in COVID-19 infection. Nature Aging, 4(11), 1598–1618. https://doi.org/10.1038/s43587-024-00730-z
16. Mavrikaki, M., Lee, J. D., Solomon, I. H., & Slack, F. J. (2022). Severe COVID-19 is associated with molecular signatures of aging in the human brain. Nature Aging, 2(12), 1130–1137. https://doi.org/10.1038/s43587-022-00321-w
18. Wu, W., Alexander, J.S., Booth, J. L., Miller, C., Metcalf, J.P., &Drevets, D.A. (2024). Influenza virus infection exacerbates gene expression related to neurocognitive dysfunction in brains of old mice. Immunity & Ageing, 21(1). https://doi.org/10.1186/s12979-024-00447-y .
19. Sarkar, A., & Ghosh, S. (2024). SARS-CoV-2 persistence: A potential catalyst for ageassociated neurodegenerative diseases. Advanced Neurology, 0(0), 4267. https://doi.
20. Cairns, D.M., Smiley, B.M., Smiley, J.A., Khorsandian, Y. A., Kelly, M., Itzhaki, R.F., &
21. Wang, Z., Liu, J., Han, J., Zhang, T., Li, S., Hou, Y., Su, H., Han, F., & Zhang, C. (2024). Herpes simplex virus 1 accelerates the progression of Alzheimer’s disease by modulating microglial phagocytosis and activating NLRP3 pathway. Journal of Neuroinflammation, 21(1). https:// doi.org/10.1186/s12974-024-03166-9.
23. Schreiner, T., Romanescu, C., Schreiner, O., &Nhambasora, F. (2024). New insights on
24. Zhang, N., Zuo, Y., Jiang, L., Peng, Y., Huang, X., & Zuo, L. (2022). Epstein-Barr Virus and Neurological Diseases. Frontiers in Molecular Biosciences, 8. https://doi.org/10.3389/ fmolb.2021.816098..
25. Naffaa, M.M. (2025). SARS-CoV-2 and its long-term neurological impact: Unraveling the mechanisms of neurodegeneration and cognitive decline. Advanced Neurology, 0(0), 4909. https://doi.org/10.36922/an.4909.
26. Sian-Hulsmann, J., & Riederer, P. (2024). Virus-induced brain pathology and the neuroinflammation-inflammation continuum: the neurochemists view. Journal of Neural Transmission. https://doi.org/10.1007/ s00702-023-02723-5
27. Römer, C. (2021). Viruses and Endogenous Retroviruses as Roots for Neuroinflammation and Neurodegenerative Diseases. Frontiers in Neuroscience, 15, 648629. https://doi. org/10.3389/FNINS.2021.648629.
28. Wylezinski, L.S., Sesler, C.L., Shaginurova, G., Grigorenko, E.V., Wohlgemuth, J. G., Cockerill, F.R., Racke, M.K., & Spurlock, C. F. (2024). Machine learning analysis using RNA-seq to distinguish neuromyelitis optica from multiple sclerosis and identify therapeutic candidates. The Journal of Molecular Diagnostics. https:// doi.org/10.1016/j.jmoldx.2024.03.003
29. Dasari, C.M., & Bhukya, R. (2021). Explainable deep neural networks for novel viral genome prediction. Applied Intelligence, 1–16. https:// doi.org/10.1007/S10489-021-02572-3
30. Rolfe, A. J., Bosco, D.B., Wang, J., Nowakowski, R.S., Fan, J., & Ren, Y. (2016). Bioinformatic analysis reveals the expression of unique transcriptomic signatures in Zika virus infected human neural stem cells. Cell & Bioscience, 6(1), 42. ttps://doi.org/10.1186/S13578-016- 0110-X
32. Wang, Q., Readhead, B., Chen, K., Su, Y., Reiman, E.M., Dudley, J.T., & Dudley, J.T. (2021). Deep Learning-Based Brain Transcriptomic Signatures Associated with the Neuropathological and Clinical Severity of Alzheimer’s Disease. bioRxiv. https://doi. org/10.1101/2021.06.08.447615
34. Bain, C., Ramamoorthy, D., & Fraenkel, E. (n.d.). Using Supervised Machine Learning Methods to Create a Gene-Based ALS Predictor from Postmortem Transcriptomics Data.
35. Park, M., Ahn, J., Lim, J., Han, M., Lee, J., Lee, J., Hwang, S., & Kim, K. (2024). A Transcriptomics-Based Machine Learning Model Discriminating Mild Cognitive Impairment and the Prediction of Conversion to Alzheimer’s Disease. Cells, 13(22), 1920. https://doi.org/10.3390/cells13221920
36. Ahammad, I., Lamisa, A. B., Bhattacharjee, A., Jamal, T. B., Arefin, Md. S., Chowdhury, Z. M., Hossain, M. U., Das, K. C., Keya, C. A., &Salimullah, M. (2024). AITeQ: a machine learning framework for Alzheimer’s prediction using a distinctive five-gene signature. Briefings in Bioinformatics, 25(4). https://doi. org/10.1093/bib/bbae291.
37. Chiricosta, L., D’Angiolini, S., Gugliandolo, A., & Mazzon, E. (2022). Artificial Intelligence Predictor for Alzheimer’s Disease Trained on Blood Transcriptome: The Role of Oxidative Stress. International Journal of Molecular Sciences, 23(9), 5237. https://doi.org/10.3390/ ijms23095237
38. Bakkar, N., Kovalik, T., Lorenzini, I., Spangler, S., Lacoste, A. M. B., Sponaugle, K., Ferrante, P., Argentinis, E., Sattler, R., & Bowser, R. (2018). Artificial intelligence in neurodegenerative disease research: use of IBM Watson to identify additional RNA-binding proteins altered in amyotrophic lateral sclerosis. Acta Neuropathologica, 135(2), 227–247. https:// doi.org/10.1007/S00401-017-1785-8
39. Usman, M., Varea, O., Radeva, P., Canals, J. M., Abante, J., & Guillot Ortiz, D. (2025). Explainable AI model reveals disease-related mechanisms in single-cell RNA-seq data. https://doi.org/10.48550/arxiv.2501.03923
Data Sharing Statement
There are no additional data available. All raw data and code are available upon request.
Funding
This research received no funding.
Author Contributions
All authors contributed significantly to the work and approve its publication.
Ethics Declaration
This article does not involve any human or animal subjects, and therefore does not require ethics approval.
Acknowledgements
We would like to express our gratitude to the patients, their families, and all those who have contributed to this study.
Conflicts of Interest
No conflicts of interest.
About this article
Cite this article
Amaan Arif, Prachi Srivastava. Unusual Cradle Hook Injury with Full Thickness Upper Eyelid Loss on A 3 year
Old Boy. International Journal of Neurology and Neurosurgery. 2025; 17(2): 70-79.
This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.
This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.