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Optimization of Short Tendem Repeats (STR) Typing, PCR, Electrophoresis Based methods in the Field of Forensics

Anita Yadav, Atush Yadav, Aashi Dixit

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Journal of Clinical Forensic Sciences 02(02):p 53-57, JULY – DEC 2024. | DOI: https://doi.org/10.21088/jcfs.3107.6874.2224.2

How Cite This Article:

Atush Yadav, Aashi Dixit, Anita Yadav. Optimization of Short Tendem Repeats (STR) typing, PCR, Electrophoresis based methods in the field of Forensics. Jr of Clin Forensic Sci. 2024;2(2):53–57.

Timeline

Received : August 08, 2023         Accepted : November 01, 2023          Published : December 30, 2024

Abstract

Microsatellites, also known as short tandem repeats (STRs), account for 3% of the human genome and have been associated with a number of disorders. More de novo mutations occur in each generation because of them than from any other variation, although their importance in naturally occurring diseases like autism and neuro developmental disorders has not yet been investigated. The core of forensic DNA profiles are STRs. The sterile nature of PCR necessitates the use of gloves, autoclaving, sterile settings, and DNA and D Nasefree reagents. An experiment's negative control aids in the detection of contamination. DNA sequences with short tandem repeats (STR) have become commonplace, emphasizing the importance of examination. Although validation is crucial for forensic samples that comprise mixtures, the introduction of multiplexed reactions has made STR analysis easier in case work. Genetic analysis of STR loci has proven to be the most accurate way to identify biological components in forensic investigations and human remains. The utilization of primer sequences to differentiate between sequences and the capacity to distinguish across over lapping size ranges are two advantages of STR amplicons. Although contamination within farmed cell lines continues to be an issue, contamination across species and within individual species happens in considerable percentages.


References

  • 1.   Ferrannini E, Natali A, Bell P, Cavallo-Perin P, Lalic N, Mingrone G. Insulin resistance and hypersecretion in obesity. European Group for the Study of Insulin Resistance (EGIR). J Clin Invest [Internet]. 1997 [cited 2023 Jul 24];100(5):1166–73.
  • 2.   Guma SR, Lee DA, Yu L, Gordon N, Hughes D, Stewart J, et al. Natural killer cell therapy and aerosol interleukin-2 for the treatment of osteosarcoma lung metastasis: NK/Aerosol IL-2 Therapy for OS Lung Metastasis. Pediatr Blood Cancer [Internet]. 2014 [cited 2023 Jul 24];61(4):618–26.
  • 3.   Prodhan P, Bhutta AT, Gossett JM, Stroud MH, Rycus PT, Bratton SL, et al. Extracorporeal membrane oxygenation support among children with adenovirus infection: a review of the Extracorporeal Life Support Organization registry. ASAIO J [Internet]. 2014 [cited 2023 Jul 24];60(1):49–56.
  • 4.   Scott DGI, Claydon P, Ellis C. Retrospective evaluation of continuation rates following a switch to subcutaneous methotrexate in rheumatoid arthritis patients failing to respond to or tolerate oral methotrexate: the Mentor study. Scand J Rheumatol [Internet]. 2014 [cited 2023 Jul 24];43(6):470–6.
  • 5.   Zohner CM, Strauß AFT, Baumgarten F, Vitasse Y, Renner SS. Rising air humidity during spring does not trigger leaf-out in temperate woody plants. New Phytol [Internet]. 2020 [cited 2023 Jul 24];225(1):16–20.
  • 6.   Leiber C. Erectile dysfunction: Current diagnostics and treatment. Urologe A [Internet]. 2017 [cited 2023 Jul 24];56(4):519–29.
  • 7.   Forensic D, Str Loci, Butler JM. Genetics and genomics of core short tandem repeat loci used in human identity testing. Journal of Forensic Sciences. 2006;51(2):253–65.
  • 8.   Nist.gov. [cited 2023 Jul 24].
  • 9.   Lupski JR. Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits. Trends Genet [Internet]. 1998;14(10):417–22.
  • 10.   Pcr E, Str Analysis, Gill P, Jeffreys AJ, Werrett DJ. Forensic application of DNA “fingerprints.” Nature. 1985;318(6046):577–9.
  • 11.   Promega.com. [cited 2023 Jul 24].
  • 12.   P.D. Martin, H. Schmitter, P.M. Schneider, A brief history of the formation of DNA databases in forensic science within Europe, Forensic Sci. Int. 119 (2001) 225–231.
  • 13.   Korch C, Hall EM, Dirks WG, Ewing M, Faries M, Varella-Garcia M, Robinson S, Storts D, Turner JA, Wang Y, Burnett EC, Healy L, Kniss D, Neve RM, Nims RW, Reid YA, Robinson WA, Capes Davis A. Authentication of M14 melanoma cell line proves misidentification of MDA-MB-435 breast cancer cell line. Int J Cancer. 2018;142:561–572. PMID.
  • 14.   Gey GO, Coffman WD, Kubicek MT. Tissue culture studies of the proliferative capacity of cervical carcinoma and normal epithelium. Cancer Res. 1952;12:264–265.
  • 15.   Lucey BP, Nelson-Rees WA, Hutchins GM. Henrietta Lacks, HeLa cells, and cell culture contamination. Arch Pathol Lab Med. 2009;133:1463–1467. PMID.
  • 16.   MacLeod RA, Dirks WG, Matsuo Y, Kaufmann M, Milch H, Drexler HG. Widespread intraspecies crosscontamination of human tumor cell lines arising at source. Int J Cancer. 1999;83:555–563. PMID.
  • 17.   Schweppe RE, Klopper JP, Korch C, Pugazhenthi U, Benezra M, Knauf JA, Fagin JA, Marlow LA, Copland JA, Smallridge RC, Haugen BR. Deoxyribonucleic acid profiling analysis of 40 human thyroid cancer cell lines reveals cross-contamination Page | 46 resulting in cell line redundancy and misidentification. J Clin Endocrinol Metab. 2008;93:4331–4341. PMID.
  • 18.   Coriell LL. Detection and elimination of contaminating organisms. Natl Cancer Inst Monogr. 1962;7:33–53. PMID.

Data Sharing Statement

There are no additional data available. All raw data and code are available upon request.

Funding

This research received no funding.

Author Contributions

All authors contributed significantly to the work and approve its publication.

Ethics Declaration

This article does not involve any human or animal subjects, and therefore does not require ethics approval.

Acknowledgements

We would like to express our gratitude to the patients, their families, and all those who have contributed to this study.

Conflicts of Interest

The authors report no conflicts of interest in this work.


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Cite this article

Atush Yadav, Aashi Dixit, Anita Yadav. Optimization of Short Tendem Repeats (STR) typing, PCR, Electrophoresis based methods in the field of Forensics. Jr of Clin Forensic Sci. 2024;2(2):53–57.


Licence:

Attribution-Non-commercial 4.0 International (CC BY-NC 4.0)

This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.


Received Accepted Published
August 08, 2023 November 01, 2023 December 30, 2024

DOI: https://doi.org/10.21088/jcfs.3107.6874.2224.2

Keywords

Neuro Development DisordersHuman GenomePCRDNASterile

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Received August 08, 2023
Accepted November 01, 2023
Published December 30, 2024

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Attribution-Non-commercial 4.0 International (CC BY-NC 4.0)

This license enables reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.


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